VThunter
a database for single-cell screening of virus target cells in animal kingdom
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Zebrafish

Scientific Name: Danio rerio

Taxonomy: Cellular organisms-> Eukaryota-> Opisthokonta-> Metazoa-> Eumetazoa-> Bilateria-> Deuterostomia-> Chordata-> Craniata-> Vertebrata-> Gnathostomata-> Teleostomi-> Euteleostomi-> Actinopterygii-> Actinopteri-> Neopterygii-> Teleostei-> Osteoglossocephalai-> Clupeocephala-> Otomorpha-> Ostariophysi-> Otophysi-> Cypriniphysae-> Cypriniformes-> Cyprinoidei-> Danionidae-> Danioninae-> Danio

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Encephalomyocarditis virus

Family: Picornaviridae

Receptor: VCAM1

Receptor VCAM1 information

Summary: This gene is a member of the Ig superfamily and encodes a cell surface sialoglycoprotein expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Three alternatively spliced transcripts encoding different isoforms have been described for this gene. [provided by RefSeq, Dec 2010] [NCBI]  [Proteinatlas]

Data Source

Data set information

Project Date Technology Tissue Condition Cell PMID/DOI
Vthunter_1003 2017.09 Smart-seq2 KidneyMarrow Normal 245 Link
Vthunter_1020 2018.11 Smart-seq2 Gut Normal 252 Link
Vthunter_110071 2019.12 MARS-seq TotalBrain Normal 1920 Link
Featureplot of receptors

Featureplot of receptors

mRNA expression of VCAM1 in human tissues   [NCBI]

Expression: Biased expression in spleen (RPKM 208.8), lymph node (RPKM 52.3) and 7 other tissues

Protein expression of VCAM1 in human tissues   [Proteinatlas]